#!/bin/sh -e

pkg=abyss

if [ "$ADTTMP" = "" ] ; then
  ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
fi

cd $ADTTMP

cp -a /usr/share/doc/${pkg}/test-data/ .
gunzip -r *

abyss-pe k=25 name=test in='test-data/reads1.fastq test-data/reads2.fastq'




